Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs112405337 chr1:202797727 A/G 3.7E-5 498 22.6 19.73 5.12 KM Plot
LGG rs112467094 chr5:168960943 G/T 1.46E-8 509 22.37 23.63 6.83 KM Plot
LGG rs112486647 chr5:169009893 T/C 1.55E-8 507 22.47 23.25 6.83 KM Plot
LGG rs112489804 chr5:169008399 G/C 1.62E-8 506 22.57 23.25 6.83 KM Plot
LGG rs112499221 chr6:53113320 G/A 3.08E-5 509 22.67 20.18 14.8 KM Plot
LGG rs11253458 chr10:882843 T/C 3.24E-7 507 21.83 24.5 14.43 KM Plot
LGG rs11253459 chr10:886402 C/T 2.3E-6 504 21.87 24.23 14.47 KM Plot
LGG rs11253460 chr10:887382 C/G 3.53E-7 505 21.7 24.5 14.43 KM Plot
LGG rs11253462 chr10:889323 T/G 2.5E-6 502 21.83 24.23 14.47 KM Plot
LGG rs11253465 chr10:897208 A/C 3.22E-8 506 21.83 24.5 14.15 KM Plot
LGG rs11253467 chr10:901244 A/G 3.22E-8 506 21.83 24.5 14.15 KM Plot
LGG rs11253468 chr10:903261 G/A 3.53E-8 504 21.85 24.52 14.15 KM Plot
LGG rs11253473 chr10:906826 A/G 3.39E-8 505 21.83 24.52 14.15 KM Plot
LGG rs11253475 chr10:907262 C/A 3.25E-8 506 21.77 24.52 14.15 KM Plot
LGG rs11253485 chr10:919362 C/T 2.94E-8 506 21.77 24.52 14.15 KM Plot